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Published in Nature communications, 2025
Authors: Yue Fei, Shuang Fu, Wei Shi, Ke Fang, Ruixiong Wang,Tianlun Zhang & Yiming Li*(2025). "Scalable and lightweight deep learning for efficient high accuracy single-molecule localization microscopy" Nature communications.
Published in Photonics Research, 2025
Authors: JIANWEI CHEN, WEI SHI,JIANZHENG FENG,JIANLIN WANG,SHENG LIU,AND YIMING LI*(2025). "Upsampled PSF enables high accuracy 3D superresolution imaging with sparse sampling rate " Photonics Research.
Published in Optics Letters , 2025
Authors: Jianwei Chen,Haoyu Wang,Zhaojun Lin, AND Yiming Li∗(2025). "Multicolor 4Pi single-molecule localization based on differences in interference patterns " Optics Letters .
Published in nature cell biology, 2025
Authors: Gang Ma, Xiuling Fu, Lulu Zhou, Isaac A. Babarinde1, Liyang Shi, Wenting Yang, Jiao Chen, Zhen Xiao, Yu Qiao, Lisha Ma, Yuhao Ou, Yuhao Li, Chen Chang, Boping Deng, Ran Zhang, Li Sun, Guoqing Tong, Dongwei Li*, Yiming Li *& Andrew P. Hutchins*(2025). "The nuclear matrix stabilizes primed-specific genes in human pluripotent stem cells " nature cell biology.
Published in Optics Express, 2024
Authors: MENGFAN LI,WEI SHI,SHENG LIU,SHUANG FU,YUE FEI,LULU ZHOU,KE FANG, AND YIMING LI* (2024). "Fast and universal single-molecule localization using multi-dimensional point spread functions " Optics Express.
Published in Analytical Chemistry, 2024
Authors: Zhou, Lulu; Shi, Wei; Fu, Shuang; Li, Mengfan; Chen, Jianwei; Fang, Ke; Li, Yiming; (2024). "High Refractive Index Imaging Buffer for Dual-Color 3D SMLM Imaging of Thick Samples " Analytical Chemistry.
Published in Nature communications, 2024
Authors: Xuanyan Jia, Leishu Lin, Siqi Guo, Lulu Zhou, Gaowei Jin,Jiayuan Dong, Jinman Xiao, Xingqiao Xie, Yiming Li, Sicong He, Zhiyi Wei & Cong Yu (2024). "CLASP-mediated competitive binding in protein condensates directs microtubule growth " Nature communications.
Published in Science Advances, 2024
Authors: Simon Zhongyuan Tian#*, Yang Yang#, Duo Ning#, Ke Fang#, Kai Jing, Guangyu Huang, Yewen Xu, Pengfei Yin, Haibo Huang, Gengzhan Chen, Yuqing Deng, Shaohong Zhang, Zhimin Zhang, Zhenxia Chen, Tong Gao, Wei Chen, Guoliang Li, Ruilin Tian, Yijun Ruan*, Yiming Li*, Meizhen Zheng*(2024). "3D chromatin structures associated with ncRNA roX2 for hyperactivation and coactivation across the entire X chromosome " Science Advances.
Published in Nature Methods, 2024
Authors: Li, Yiming; Ries, Jonas(2024). "Decoding microscopy images by accurate measurement of point spread functions " Nature Methods.
Published in Nature Methods, 2024
Authors: Sheng Liu#, Jianwei Chen#, Jonas Hellgoth, Lucas-Raphael Müller, Boris Ferdman, Christian Karras, Dafei Xiao, Keith A. Lidke, Rainer Heintzmann, Yoav Shechtman, Yiming Li*, Jonas Ries*(2024). "Universal inverse modelling of point spread functions for SMLM localization and microscope characterization " Nature Methods.
Published in Optics Letters, 2024
Authors: Li, Yunze#; He, Yingchuan#; Fang, Ke; Zhou, Lulu; Wang, Zhen; Shi, Wei; Li, Yiming (2024). "3D drift correction for super-resolution imaging with a single laser light " Optics Letters.
Published in CCS Chemistry, 2024
Authors: Ji Gao, Weijun Wu, Lulu Zhou, Shaokuan Gong, Chong Li, Xihan Chen, Yiming Li*, Kai Li* (2024). "Facile Blinking Dyes with Spontaneous Enol-Keto Tautomerism for Super-Resolution Imaging of Subcellular Targets " CCS Chemistry.
Published in Photonics Research, 2024
Authors: Shi, Wei#; He, Yingchuan#; Wang, Jianlin; Zhou, Lulu; Chen, Jianwei; Zhou, Liwei; Xi, Zeyu; Wang, Zhen; Fang, Ke; Li, Yiming (2024). "Aberration correction for deformable-mirror-based remote focusing enables high-accuracy whole-cell super-resolution imaging " Photonics Research.
Published in Optics Express, 2023
Authors: Huanzhi Chang, Shuang Fu, Yiming Li (2023). "Optimal Sampling Rate for 3D Single Molecule Localization " Optics Express
Published in Clinical and Translational Medicine, 2023
Authors: Wei Shi, Shuang Fu, Yiming Li (2023). "High‐throughput single‐molecule localization microscopy: Potential clinical applications " Clinical and Translational Medicine
Published in Nature methods, 2023
Authors: Shuang Fu#, Wei Shi#, Tingdan Luo, Yingchuan He, Lulu Zhou, Jie Yang, Zhichao Yang, Jiadong Liu, Xiaotian Liu, Zhiyong Guo, Chengyu Yang, Chao Liu, Zhen-li Huang, Jonas Ries, Mingjie Zhang, Peng Xi, Dayong Jin，Yiming Li (2023). "Field dependent deep learning enables high-throughput whole-cell 3D super-resolution imaging " Nature methods
Published in Chinese Optics, 2022
Authors: Mengfan Li, Jianwei Chen, Wei Shi, Shuang Fu, Yunze Li, Tingdan Luo, Junfan Chen, Yiming Li (2022). "Advances in multi-dimensional single molecule imaging " Chinese Optics
Published in Nature Communication, 2022
Authors: Yiming Li*, Wei Shi, Sheng Liu, Ivana Cavka, Yu-Le Wu, Ulf Matti, Decheng Wu, Simone Koehler, Jonas Ries* (2022). "Global fitting for high-accuracy multi-channel single-molecule localization " Nature Communication
Published in Nature Communications, 2022
Authors: Robin Diekmann, Joran Deschamps, Yiming Li, Takahiro Deguchi, Aline Tschanz, Maurice Kahnwald, Ulf Matti & Jonas Ries (2022). "Photon-free (s)CMOS camera characterization for artifact reduction in high- and super-resolution microscopy " Nature Communications. 13(1).
Published in Journal of Cell Biology, 2022
Authors: Mingming Ji, Meng Li, Long Sun, Hongyu Zhao, Ying Li, Lulu Zhou, Zhenni Yang, Xin Zhao, Wenyan Qu, Hanbing Xue, Ze Zheng, Yiming Li, Hongyu Deng, Yan G Zhao (2022). "VMP1 and TMEM41B are essential for DMV formation during β-coronavirus infection " Journal of Cell Biology. 221(6).
Published in Optics Letters, 2022
Authors: Shuang Fu, Mengfan Li, Lulu Zhou, Yingchuan He, Xin Liu, Xiang Hao, Yiming Li (2022). "Deformable mirror based optimal PSF engineering for 3D super-resolution imaging " Optics Letters. 47(12).
Published in Optics Letters, 2022
Authors: Jianwei Chen, Benxi Yao, Zhichao Yang, Wei Shi, Tingdan Luo, Peng Xi, Dayong Jin, Yiming Li (2022). "Ratiometric 4Pi single-molecule localization with optimal resolution and color assignment " Optics Letters. 47(2).
Published in Engineering, 2022
Authors: Xiang Hao, Yiming Li, Shuang Fu, Yanghui Li, Yingke Xu, Cuifang Kuang, Xu Liu (2022). "Review of 4Pi Fluorescence Nanoscopy " Engineering. 146-153,11.
Published in Nature Protocols, 2021
Authors: Jingyu Wang, Edward S Allgeyer, George Sirinakis, Yongdeng Zhang, Kevin Hu, Mark D Lessard, Yiming Li, Robin Diekmann, Michael A Phillips, Ian M Dobbie, Jonas Ries, Martin J Booth, Joerg Bewersdorf (2021). "Implementation of a 4Pi-SMS super-resolution microscope " Nature Protocols. 16(2).
Published in Optics Letters, 2020
Authors: Yiming Li, Elena Buglakova, Yongdeng Zhang, Jervis Vermal Thevathasan, Joerg Bewersdorf, Jonas Ries (2020). "Accurate 4Pi single-molecule localization using an experimental PSF model " Optics Letters. 45(13).
Published in Nature Methods, 2020
Authors: Yongdeng Zhang, Lena K Schroeder, Mark D Lessard, Phylicia Kidd, Jeeyun Chung, Yuanbin Song, Lorena Benedetti, Yiming Li, Jonas Ries, Jonathan B Grimm, Luke D Lavis, Pietro De Camilli, James E Rothman, David Baddeley, Joerg Bewersdorf (2020). "Nanoscale subcellular architecture revealed by multicolor three-dimensional salvaged fluorescence imaging " Nature Methods. 17(2).
Published in The Journal of Physical Chemistry Letters, 2020
Authors: Jiayan Liao, Dayong Jin, Chaohao Chen, Yiming Li, and Jiajia Zhou (2020). "Helix Shape Power-Dependent Properties of Single Upconversion Nanoparticles " The Journal of Physical Chemistry Letters. 11(8).
Published in Nature Methods, 2019
Authors: Jervis Vermal Thevathasan, Maurice Kahnwald, Konstanty Cieśliński, Philipp Hoess, Sudheer Kumar Peneti, Manuel Reitberger, Daniel Heid, Krishna Chaitanya Kasuba, Sarah Janice Hoerner, Yiming Li, Yu-Le Wu, Markus Mund, Ulf Matti, Pedro Matos Pereira, Ricardo Henriques, Bianca Nijmeijer, Moritz Kueblbeck, Vilma Jimenez Sabinina, Jan Ellenberg, Jonas Ries (2019). "Nuclear pores as versatile reference standards for quantitative superresolution microscopy " Nature Methods. 16(10).
Published in Biomedical Optics Express, 2019
Authors: Yiming Li, Yu-Le Wu, Philipp Hoess, Markus Mund, Jonas Ries (2019). "Depth-dependent PSF calibration and aberration correction for 3D single-molecule localization " Biomedical Optics Express. 10(6).
Published in Nature Methods, 2018
Authors: Yiming Li, Markus Mund, Philipp Hoess, Joran Deschamps, Ulf Matti, Bianca Nijmeijer, Vilma Jimenez Sabinina, Jan Ellenberg, Ingmar Schoen, Jonas Ries (2018). "Real-time 3D single-molecule localization using experimental point spread functions " Nature Methods. 15(5).
Published in bioRxiv, 2017
Authors: Li Y, Mund M, Hoess P, Matti U, Nijmeijer B, Jimenez Sabinina V, Ellenberg J, Schoen I, Ries J (2017). "Fast, robust and precise 3D localization for arbitrary point spread functions " bioRxiv. 1-16.
Published in Nanoscale, 2016
Authors: Yiming Li, Li Shang, G Ulrich Nienhaus (2016). "Super-resolution imaging-based single particle tracking reveals dynamics of nanoparticle internalization by live cells " Nanoscale. 8(14).
Published in Science Advances, 2015
Authors: Yuji Ishitsuka, Natasha Savage, Yiming Li, Anna Bergs, Nathalie Grün, Daria Kohler, Rebecca Donnelly, G Ulrich Nienhaus, Reinhard Fischer, Norio Takeshita (2015). "Superresolution microscopy reveals a dynamic picture of cell polarity maintenance during directional growth " Science Advances. 1(10).
Published in ACS Nano, 2013
Authors: Yiming Li, Yuji Ishitsuka, Per Niklas Hedde, G Ulrich Nienhaus (2013). "Fast and Efficient Molecule Detection in Localization-Based Super-Resolution Microscopy by Parallel Adaptive Histogram Equalization " ACS Nano. 7(6).
Published in Biomedical Signal Processing and Control, 2010
Authors: Shuo Chen, Xiaorui Feng, Yiming Li, Chuanqing Zhou, Peng Xi, Qiushi Ren (2010). "Software controlling algorithms for the system performance optimization of confocal laser scanning microscope " Biomedical Signal Processing and Control. 5(13).